This course seeks to provide an introduction to R programming and the cytometry focused tools in the Bioconductor libraries.

I.   Overview of R and Bioconductor

      a.  Installing R

      b.  Installing libraries in R

      c.  Installing Bioconductor libraries in R

      d.  Introduction to cytometry packages available in Bioconductor

      e.  Introduction to cytometry packages not available in Bioconductor

II.   Basics of fcs file manipulation in R

III.  The power of Bioconductor vignettes

      a.  Using a vignette to analyze your own data

      b.  Stringing vignettes together to create your own analysis pipelines

IV.  Further resources to explore

      a.  CyTOF Forum

      b.  Bioconductor mailing list

      c.  Github, sourceforge, reddit discussion boards

V.  Conclusions/Discussion

Seminar Information
Seminar Date:
June 10, 2017
Introduction to R

This course seeks to provide an introduction to R programming and the cytometry focused tools in the Bioconductor libraries.

I.   Overview of R and Bioconductor

      a.  Installing R

      b.  Installing libraries in R

      c.  Installing Bioconductor libraries in R

      d.  Introduction to cytometry packages available in Bioconductor

      e.  Introduction to cytometry packages not available in Bioconductor

II.  Basics of fcs file manipulation in R

III. The power of Bioconductor vignettes

      a.  Using a vignette to analyze your own data

      b.  Stringing vignettes together to create your own analysis pipelines

IV. Further resources to explore

      a.  CyTOF Forum

      b.  Bioconductor mailing list

      c.  Github, sourceforge, reddit discussion boards

V.  Conclusions/Discussion

Speaker Information
Brian Capaldo  [ view bio ]
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CYTO 2017 Scientific Tutorial
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Non-Member Price:$37.50
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Products
CYTO 2017 Scientific Tutorial
ISAC Member Price: $0.00
Non-Member Price:$37.50